Construction of DNA Codes From Composite Matrices and a Bio-Inspired Optimization Algorithm

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dc.authoridhttps://orcid.org/0000-0001-5206-6480
dc.authoridhttps://orcid.org/0000-0002-2084-6260
dc.authoridhttps://orcid.org/0000-0002-5229-4018
dc.authorscopusid26325279300
dc.authorscopusid57206665622
dc.authorscopusid55420759300
dc.authorscopusid36728602600
dc.authorwosidCOV-5724-2022
dc.authorwosidDWJ-0396-2022
dc.authorwosidABB-4228-2020
dc.authorwosidGQB-3301-2022
dc.contributor.authorKorban, Adrian
dc.contributor.authorŞahinkaya, Serap
dc.contributor.authorÜstün, Deniz
dc.contributor.authorDougherty, S. T.
dc.date.accessioned2023-08-29T09:34:44Z
dc.date.available2023-08-29T09:34:44Z
dc.date.issued2023
dc.departmentFakülteler, Mühendislik Fakültesi, Bilgisayar Mühendisliği Bölümü
dc.description.abstractIndexed keywords SciVal Topics Metrics Funding details Abstract In this work, we present a new construction method for reversible codes. We employ composite matrices derived from group rings and show how to construct these matrices so that they are also reversible. Also in this work, we give an algorithm for calculating conflict free DNA codes that satisfy the Hamming distance, the reverse, the reverse-complement, the GC-content constraints with each DNA codeword being free from reverse complement sub-strings. By employing our construction method for reversible codes and our algorithm, we construct a number of DNA codes that satisfy the above constraints. Many of the codes we obtain have better parameters than some known DNA codes and many have parameters that are new to the literature.
dc.identifier.citationDougherty, S.T., Korban, A. Sahinkaya, S. ve Ustun, D. (2023). Construction of DNA Codes From Composite Matrices and a Bio-Inspired Optimization Algorithm. IEEE Transactions on Information Theory, 69,3, 1588-1603. doi: 10.1109/TIT.2022.3217518.
dc.identifier.doi10.1109/TIT.2022.3217518
dc.identifier.endpage1603en_US
dc.identifier.issn0018-9448
dc.identifier.issn1557-9654
dc.identifier.issue3en_US
dc.identifier.scopus2-s2.0-85141528606
dc.identifier.scopusqualityQ1
dc.identifier.startpage1588en_US
dc.identifier.uri10.1109/TIT.2022.3217518
dc.identifier.urihttps://hdl.handle.net/20.500.13099/173
dc.identifier.volume69en_US
dc.identifier.wosWOS:000966393600001
dc.identifier.wosqualityQ3
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.institutionauthorŞahinkaya, Serap
dc.institutionauthorÜstün, Deniz
dc.language.isoen
dc.publisherIEEE-INST Electrical Electronics Engineers Inc.
dc.relation.ispartofIEEE Transactions on Information Theory
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı
dc.rightsinfo:eu-repo/semantics/restrictedAccess
dc.subjectcomposite matrices
dc.subjectconflict free DNA codes
dc.subjectDNA codes
dc.subjectgroup rings
dc.subjectBioinformatics
dc.subjectBiomimetics
dc.subjectCodes (symbols)
dc.subjectDNA
dc.subjectDNA sequences
dc.subjectGene encoding
dc.subjectBio-inspired optimizations
dc.subjectComposite matrices
dc.subjectConflict free
dc.subjectConflict free DNA code
dc.subjectConstruction method
dc.subjectDNA codes
dc.subjectGroup rings
dc.subjectOptimization algorithms
dc.subjectReversible codes
dc.subjectHamming distance
dc.titleConstruction of DNA Codes From Composite Matrices and a Bio-Inspired Optimization Algorithm
dc.typeArticle

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