Construction of DNA Codes From Composite Matrices and a Bio-Inspired Optimization Algorithm

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dc.authoridhttps://orcid.org/0000-0001-5206-6480en_US
dc.authoridhttps://orcid.org/0000-0002-2084-6260en_US
dc.authoridhttps://orcid.org/0000-0002-5229-4018en_US
dc.authorscopusid26325279300en_US
dc.authorscopusid57206665622en_US
dc.authorscopusid55420759300en_US
dc.authorscopusid36728602600en_US
dc.authorwosidCOV-5724-2022en_US
dc.authorwosidDWJ-0396-2022en_US
dc.authorwosidABB-4228-2020en_US
dc.authorwosidGQB-3301-2022en_US
dc.contributor.authorKorban, Adrian
dc.contributor.authorŞahinkaya, Serap
dc.contributor.authorÜstün, Deniz
dc.contributor.authorDougherty, S. T.
dc.date.accessioned2023-08-29T09:34:44Z
dc.date.available2023-08-29T09:34:44Z
dc.date.issued2023en_US
dc.departmentFakülteler, Mühendislik Fakültesi, Bilgisayar Mühendisliği Bölümüen_US
dc.description.abstractIndexed keywords SciVal Topics Metrics Funding details Abstract In this work, we present a new construction method for reversible codes. We employ composite matrices derived from group rings and show how to construct these matrices so that they are also reversible. Also in this work, we give an algorithm for calculating conflict free DNA codes that satisfy the Hamming distance, the reverse, the reverse-complement, the GC-content constraints with each DNA codeword being free from reverse complement sub-strings. By employing our construction method for reversible codes and our algorithm, we construct a number of DNA codes that satisfy the above constraints. Many of the codes we obtain have better parameters than some known DNA codes and many have parameters that are new to the literature.en_US
dc.identifier.citationDougherty, S.T., Korban, A. Sahinkaya, S. ve Ustun, D. (2023). Construction of DNA Codes From Composite Matrices and a Bio-Inspired Optimization Algorithm. IEEE Transactions on Information Theory, 69,3, 1588-1603. doi: 10.1109/TIT.2022.3217518.en_US
dc.identifier.doi10.1109/TIT.2022.3217518en_US
dc.identifier.endpage1603en_US
dc.identifier.issn0018-9448
dc.identifier.issn1557-9654
dc.identifier.issue3en_US
dc.identifier.scopus2-s2.0-85141528606en_US
dc.identifier.startpage1588en_US
dc.identifier.uri10.1109/TIT.2022.3217518
dc.identifier.urihttps://hdl.handle.net/20.500.13099/173
dc.identifier.volume69en_US
dc.identifier.wosWOS:000966393600001en_US
dc.identifier.wosqualityQ3en_US
dc.institutionauthorŞahinkaya, Serap
dc.institutionauthorÜstün, Deniz
dc.language.isoengen_US
dc.publisherIEEE-INST Electrical Electronics Engineers Inc.en_US
dc.relation.ispartofIEEE Transactions on Information Theoryen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/restrictedAccessen_US
dc.subjectcomposite matricesen_US
dc.subjectconflict free DNA codesen_US
dc.subjectDNA codesen_US
dc.subjectgroup ringsen_US
dc.subjectBioinformaticsen_US
dc.subjectBiomimeticsen_US
dc.subjectCodes (symbols)en_US
dc.subjectDNAen_US
dc.subjectDNA sequencesen_US
dc.subjectGene encodingen_US
dc.subjectBio-inspired optimizationsen_US
dc.subjectComposite matricesen_US
dc.subjectConflict freeen_US
dc.subjectConflict free DNA codeen_US
dc.subjectConstruction methoden_US
dc.subjectDNA codesen_US
dc.subjectGroup ringsen_US
dc.subjectOptimization algorithmsen_US
dc.subjectReversible codesen_US
dc.subjectHamming distanceen_US
dc.titleConstruction of DNA Codes From Composite Matrices and a Bio-Inspired Optimization Algorithmen_US
dc.typearticleen_US

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